Updated Comprehensive Guide To Bioinformatics Databases

[LeeAndro]

Published 7/2022MP4 | Video: h264, 1280x720 | Audio: AAC, 44.1 KHzLanguage: English | Size: 795.07 MB | Duration: 2h 19m

in and out guide to best bioinformatics databases out there being used now a days from basic to specified like genome

What you'll learn
You will gain complete understanding on Bioinformatics Databases.​

From basic to advance concepts.
After this practical course you will confidently choose database according to your research need without any doubts.
Different databases used in bioinformatics
They will be able to use and know different categories of sub-databases of NCBI.
Plant and Genome Databases
Primary Databases in Bioinformatics
Secondary Databases in Bioinformatics
After this course Students will have intermediate Knowledge of UCSC Genome Browser in Bioinformatics.
Students will be able to use different tools for Sequence Analysis and will know different categories of sub-databases.
Students will be able to use different tools of UCSC for Genome Analysis.
Students will be Able to perform Genome analysis on any gene
Tools Used in Plant Databases
They will be able to use and know different categories of sub-databases of Plant Databases.
Top ten databases being used in plant bioinformatics
Different Plant databases used in bioinformatics
Complete up-to Date Bner's Guide of top Plant Databases Used in Bioinformatics along with their utilization
You will gain concrete diffrences between Primary, Seconday and Composite database. The knowledge will help you to choose curated and reviewed data.
Requirements
Basic Understanding of Biology and Bioinformatics
Basic bioinformatics terms
Willingness to learn
Description
What is bioinformaticsIn biology, bioinformatics is defined as, "the use of a computer to store, retrieve, analyze or predict the composition or structure of bio-molecules". Bioinformatics is the application of computational techniques and information technology to the organization and management of biological data. Classical bioinformatics deals primarily with sequence analysis.Aims of bioinformaticsDevelopment of a database containing all biological information.Development of better tools for data designing, annotation, and mining.Design and development of drugs by using simulation software.Design and development of software tools for protein structure prediction function, annotation, and docking analysis.Creation and development of software to improve tools for analyzing sequences for their function and similarity with other sequencesBiological databasesBiological data are complex, exception-ridden, vast, and incomplete. Therefore several databases have been created and interpreted to ensure unambiguous results. A collection of biological data arranged in a computer-readable form that enhances the speed of search and retrieval and is convenient to use is called a biological database. A good database must have updated information.Importance of biological databaseA range of information like biological sequences, structures, binding sites, metabolic interactions, molecular action, functional relationships, protein families, motifs, and homologous can be retrieved by using biological databases. The main purpose of a biological database is to store and manage biological data and information in computer-readable forms.In this course, we learned about the different biological databases that are being used in bioinformatics and get to know a little bit about their details. Mainly these databases are divided into four categories and we learned about base by base. And explained the difference between the primary and secondary databases and explained their utilization in bioinformatics.This course will be extremely helpful to students of data analysts and bioinformaticians because they use the databases a lot in their work.If you guys have any questions or suggestions please let me know in the instructor's inbox I'll try to answer all of your questions within 12 hours.Genome Browser This course is mainly about the primary database browser called UCSC. The University of California Santa Cruz (UCSC) Genome Browser is a popular Web-based tool for quickly displaying a requested portion of a genome at any scale, accompanied by a series of aligned annotation "tracks." The annotations generated by the UCSC Genome Bioinformatics Group and external collaborators include genes.It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels. The Genome Browser Database, browsing tools, able data files, and documentation can all be found on the UCSC Genome Bioinformatics website.In this course, we will be mainly covering the utilization of the UCSC Genome Browser and perfog the whole scenario on SARS-COV-2(a strain of coronavirus).And mainly learning about the Table Browser. Table Browser is also used to calculate intersections between tracks, and to retrieve DNA sequences covered by a track.All these videos will be divided into three parts containing the Introduction, Explanation, and Summary so All of you can easily understand the Course.

Overview

Section 1: Introduction

Lecture 1 Introduction of Biological Databases

Lecture 2 Types of Biological Databases

Lecture 3 Difference Between Primary and Secondary Databases

Section 2: Primary Databases

Lecture 4 Primary Databases

Lecture 5 Explaining Primary Databases

Lecture 6 Explaining Primary Databases 2nd Part

Lecture 7 Explaining Primary Databases Last Part

Lecture 8 A Survey of Bioinformatics Database and Software Usage through Mining the Litera

Section 3: Secondary Databases

Lecture 9 Introduction of Secondary Databases

Lecture 10 Explaining Secondary Databases

Lecture 11 Explaining Secondary Databases 2nd Part

Lecture 12 Explaining Secondary Databases 3rd Part

Lecture 13 Explaining Secondary Databases 4th Part

Section 4: Plant Databases Guide

Lecture 14 Plant databases introduction and tools

Lecture 15 Types of Plant Databases

Lecture 16 Brassica database

Lecture 17 Ensembl plants

Lecture 18 Genome Size in Asteraceae Database

Lecture 19 National Center for Biotechnology Information

Lecture 20 Phytozome - DOE Joint Genome Institute

Lecture 21 Plant Genome Data Base Japan. A Portal Website for plant Integration

Lecture 22 cDNA Database

Lecture 23 rDNA database

Lecture 24 PTGBase: an integrated database to study tandem duplicated genes

Lecture 25 PlantGDB Genome Browser

Section 5: Literature Databases

Lecture 26 Introduction of Literature Databases

Lecture 27 Explaining Literature Databases

Lecture 28 Summary

Section 6: File Formats Understanding

Lecture 29 Introduction of File Formats

Lecture 30 Explaining Different File Formats

Lecture 31 Summary of this Section

Section 7: Comprehensive guide to UCSC Genome Browser

Lecture 32 Introduction

Lecture 33 Searching For Genome

Lecture 34 Retrieving Corona Virus Genome

Lecture 35 Summary

Lecture 36 Introduction of Table Browser

Lecture 37 Retrieval of Whole Genome Using Table Browser

Lecture 38 importance of UCSC Browser in Corona Virus Research

Lecture 39 Summary

Lecture 40 Visualizing Corona-Virus Sars Genome

Lecture 41 Visualizing Sars Genome

Lecture 42 Summary

Data Scientist are Encouraged to take this course,Researchers are also encouraged to take this Course

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